DNA

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From Scientific American June 2019:

“All The World’s Data Could Fit In An Egg”

A strand of DNA is about 0.00001 meters thick. That is 1/100,000 of a meter. The DNA is so tightly packed in your cells that the DNA in each cell each cell can be stretched to 2 meters (about 6 feet). If all the DNA in all of your cells was placed end to end it would be 100 trillion meters long. That is 100 million kilometers, or over 62 million miles. Your DNA would stretch 2/3 of the way to the sun, though the strand would be too thin for you to see.

An ounce of DNA has the storage density of almost thirty million hard drives.

How lucky that life stumbled on that little trick. Useful for evolution.

There isn’t a selfish gene. There is nothing selfish about it. Information, always changing, always morphing into contingent forms.

The buddha turns the dharma wheel and reality is shown in all of its many forms, we chant in a Zen service where I meditate.

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Information made manifest.

Mind made manifest.

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Nature Shows, Mind, Non-Dualsim and Intelligent Design

Straight up:

I do not, as I have written before, believe in intelligent design.

It is a dualistic concept, and so misses the deep Truth of how things are.

And in our culture intelligent design is theistic and literal religious scriptural dogma in disguise in order to try and pass off superstition as science and Truth to corrupt the minds of the young in school and the old in life.

We project our stories, our, intellect, including our understanding of randomness and creation based on our four dimensional perceptions, our scale of time and space, on life as we see it, so there is the appearance of design.

I have written about Huxley and Darwin and my respect for them and evolution. I have a collection of contemporary (to them i.e. late 19th century) Huxley and Darwin books. If you have read about plant communication (like the recent books “What a Plant Knows” or “Brilliant Green”), you have Darwin to thank. I was watching a TV special on Carnivorous plants that quotes Darwin’s studies. I have his book on insectivorous plants, the American edition of 1875, that  someone picked up and bought over 140 years ago to read! I love having the artifact that is contemporary with these original ideas and great efforts to clarify the matter of what nature is up to.

Having set that out in black and white, in bold italics, let me say that it doesn’t mean I am not sympathetic to intelligent design believers who are sincere! I mean, life is so abundant and resilient: think how fast life rebounded after multiple huge extinction events. Cant keep it down. It would take a total destruction of earth to wipe it out, like a comet blowing earth apart, and even then some might survive on the remains of the planet.

And the manifestations of life, the “solutions” (forgive the anthropomorphizing) to problems of survival, are so robust, so varied, complex and elegant that if you don’t pause to marvel and question whatever you may believe, no matter how scientific, you need to watch more nature shows and read more nature books and regain a sense of wonder and awe with a bit of humility!

While random variation and the obvious continuation of what works, that is, natural selection, are true and clear mechanisms for evolution (a recent Scientific American article and new book “How to Tame a Fox” illustrates a human/fox model of how selection works to create species; a model because it is manipulated with intent that natural selection does not have),  I find, despite my loyalty to evolution, that I wonder if there isn’t, in some sense, more to it than blind random chance filtered through the editing function of reproductive success. It almost pains me to type those words, but I can’t deny the sense I have that the syllogism, strong as it is, of natural selection is true and necessary, but not sufficient.

Maybe it is a matter of something like the thought patterns in Bernardo Kastrup’s top down idealism, the nature of That Which Experiences (TWE) or Mind. Maybe it is something deep about the laws of nature that we don’t write understand. I know the standard answer is deep time, randomness rules when vast numbers are involved, but I am not so convinced. Yes, I know that sounds like intelligent design. But I don’t see it as occurring “outside” of Mind, as intelligent or designed by a higher power, deity or otherwise. Rather it seems to me that Nature and Mind are one, and that matters in how the Universe unfolds.

Maybe I am wrong and apostate in this, but I am so overwhelmed by the exuberance and range of life, the incredible lack of chance implied by the way it ranges into the extremes of the world and will not be denied, that I am willing to entertain the possibility that while random chance and selection clearly are important, they just may not be the whole story on what life is as a manifestation of Mind.

In fact, the problem with defining life, and it is tough to do, as I have written before, may imply that life is not all that special, except in the way that all is special. Or nothing is special. You know, like in “ordinary mind is the way.” Or that life is a projection of Mind, perhaps in a way that Biocentrism and the Lankavatara sutra seem to me to imply, or for that matter any non-dualistic Mind-only approach seems to me to imply.

Yes, we can all agree we are made of star stuff, not separate from the workings of the cosmos. But what underlies all of that?

The mind of God (if you like that theistic approach)?

Life is, I believe, as Stephen Gaskin titled one of his books, Mind at Play.

Does matter make mind or is matter a manifestation of Mind? A foundational question. Same goes for life as for all matter, for that matter, does mind make life or life make mind.

Life is Mind. Mind is life.

That’s what I think Biocentrism is about. That’s what I think “Mind is Buddha” is about.

I am a medical scientist; this is not something I would want to confuse people about. I am only saying keep an open mind as to what life is and the role of randomness in the Universe we experience.

One show on PBS that inspired this post just now was an episode of Nature called Forest of The Lynx. Watch it. Especially note at 27-29 minutes about the trees and rain. Trees bioengineering their environment. Trees are too cool. Consciousness without brains in the animal sense of brains. Some trees, like some insects, function as super-organisms. And fungi and trees… OK I digress. Hard not to as this stuff is so wonderful! Of course now “the Hidden Life of Trees” is deservedly a best seller. Good book to read so you can really marvel at trees. But back to the PBS Nature show the forest of the lynx; at 27-29 minutes (watch the whole thing of course), they mention that trees release a molecule when they are stressed by drought, but don’t name the molecule. I am not sure what molecule they were referring to that trees release is (why don’t they just say? Frustrating when even PBS dumbs down; we can handle a word with two or more syllables), but here’s something similar: cosmic rays and trees and pine and marijuana resin and quantum effects might make clouds/rain. And have medicinal properties (Bold italics below are mine):

Ion-induced nucleation of pure biogenic particles

  • Jasper Kirkby, Jonathan Duplissy, Kamalika Sengupta, Carla Frege, Hamish Gordon, Christina Williamson, Martin Heinritzi, Mario Simon, Chao Yan, João Almeida, Jasmin Tröstl, Tuomo Nieminen, Ismael K. Ortega, Robert Wagner, Alexey Adamov, Antonio Amorim, Anne-Kathrin Bernhammer, Federico Bianchi, Martin Breitenlechner, Sophia Brilke, Xuemeng Chen, Jill Craven, Antonio Dias, Sebastian Ehrhart, Richard C. Flagan et al.

Nature 533, 521–526 (26 May 2016) doi:10.1038/nature17953

Received 06 July 2015 Accepted 16 March 2016 Published online 25 May 2016

Atmospheric aerosols and their effect on clouds are thought to be important for anthropogenic radiative forcing of the climate, yet remain poorly understood1. Globally, around half of cloud condensation nuclei originate from nucleation of atmospheric vapours2. It is thought that sulfuric acid is essential to initiate most particle formation in the atmosphere3, 4, and that ions have a relatively minor role5. Some laboratory studies, however, have reported organic particle formation without the intentional addition of sulfuric acid, although contamination could not be excluded6, 7. Here we present evidence for the formation of aerosol particles from highly oxidized biogenic vapours in the absence of sulfuric acid in a large chamber under atmospheric conditions. The highly oxygenated molecules (HOMs) are produced by ozonolysis of α-pinene. We find that ions from Galactic cosmic rays increase the nucleation rate by one to two orders of magnitude compared with neutral nucleation. Our experimental findings are supported by quantum chemical calculations of the cluster binding energies of representative HOMs. Ion-induced nucleation of pure organic particles constitutes a potentially widespread source of aerosol particles in terrestrial environments with low sulfuric acid pollution.

Regarding Pinene:

(From Wikipedia, the free encyclopedia)

Pinene (C10H16) is a bicyclic monoterpene chemical compound.[1] There are two structural isomers of pinene found in nature: α-pinene and β-pinene. As the name suggests, both forms are important constituents of pine resin; they are also found in the resins of many other conifers, as well as in non-coniferous plants such as camphorweed (Heterotheca)[3] and big sagebrush (Artemisia tridentata). Both isomers are used by many insects in their chemical communication system. The two isomers of pinene constitute the major component of turpentine.

Biosynthesis[edit]

α-Pinene and β-pinene are both produced from geranyl pyrophosphate, via cyclisation of linaloyl pyrophosphate followed by loss of a proton from the carbocation equivalent.

Plants[edit]

Alpha-pinene is the most widely encountered terpenoid in nature[4] and is highly repellant to insects.[5]

Alpha-pinene appears in conifers and numerous other plants.[6] Pinene is a major component of the essential oils of Sideritis spp. (ironwort)[7] and Salvia spp. (sage).[8] Cannabis also contains alpha-pinene.[6] Resin from Pistacia terebinthus (commonly known as terebinth or turpentine tree) is rich in pinene. Pine nuts produced by pine trees contain pinene.[6]

Makrut lime fruit peel contains an essential oil comparable to lime fruit peel oil; its main components are limonene and β-pinene.[9]

Usage[edit]

In chemical industry, selective oxidation of pinene with some catalysts gives many compounds for perfumery, such as artificial odorants. An important oxidation product is verbenone, along with pinene oxide, verbenol and verbenyl hydroperoxide. [10]

Pinenes are the primary constituents of turpentine.

Pinene has also been used as anti-cancer agent in Traditional Chinese medicine, also for its anti-inflammatory, antiseptic, expectorant and bronchodilator properties.[11]

 

Pyrrho, Buddha, Daosim and Science

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In his book “Greek Buddha” Christopher I. Beckwith discusses Pyrrho, a philosopher who went along with Alexander the Great on his world tour of conquest in the late fourth century BCE.

It seems Pyrrho went native and studied with Buddhist masters. One story is that he made a lot of money as a court poet and then he was called to task by some wise guy, maybe some Buddhist sage. Was Pyrrho just singing for his dinner or was he for real? Pyrrho took the challenge! He went after ‘for real.’

When I say he studied with Buddhist teachers, I mean he practiced. His life was transformed. When he returned to his home island he lived his life as practice. He was beloved. He lived to keep it simple, keep it real.

We have later records of his teachings. He taught things (pragmata) are:

  1. Adiaphora: ‘without a self-identity.’
  2. Astathmeta: ‘not measurable’ (I would say without beginning or end), unstable (as in unbalanced, unsettling, pulling this way and that, per Beckwith)
  3. Anepikrita: unjudged, unfixed.

Those of us familiar with Buddhist terminology will see there is a connection with dharmas as what we perceive, and pragmata, though the latter may have some other, more ethical or philosophical, connotations. Beckwith compares these three with the very basic Buddhist teachings of the Three Characteristics:

1. Anatman: no (innate) Self (Identity) [Beckwith has as third but it seems more like #1 to me]

2. Dukkha: uneasy, unsatisfactory, unsteady

3. Anitya: impermanence, unfixed.

He suggests that Pyrrho’s terms are in effect a direct translation into Greek of the Buddhist terms.

Beckwith also points out that since Pyrrho was writing and studying and practicing Buddhism around 300 BCE, his form of Buddhism is probably closer to the true teachings of the Buddha than many of the even earliest written Buddhist texts. Of course it’s not like we have the original writings of Pyrrho either, we have later versions and descriptions, and the early Buddhist writings are based on a vibrant and robust oral tradition. But Beckwith does  have a point. Pyrrho’s philosophy is certainly based on very early Buddhist teachings as understood at least by some Buddhists who lived maybe a bit more than a century after the Buddha died. The fact that in what the Sutras call the ‘first sermon’ by the Buddha, as well as in many versions of Buddhism 101, the four “noble” truths (as I have done in earlier blogs) are used to introduce Buddhist thought, does not mean they were necessarily the original core teachings. It may be that is how it was later perceived or that it fit later understandings of the Buddha’s teaching (or agendas of later teachers and practitioners, as Beckwith suggests). Beckwith goes a lot further though, and you can read his book if you care about such things. If you are Buddhist, you may take exception to some of his theories. But to me, that makes it fun!

There is a great section in Beckwith’s book on the names Lao Tzu and Gautama being the same. That intrigues me. Clearly Zen/Chan is Daoism (or Taoism; pick your spelling!) meets Indian Buddhism. Not the later Daoism of gods and demons and alchemy and immortals, but the early Daoism of Chuang-Tzu and Lao-Tzu (author of the Dao De Ching). Sometimes I think Chan/Zen is as much a form of a Chuang-Tzu’s Daoism than it is a form of Indian Buddhism! Of course Chan and Zen tradition don’t quite see it that way. And the Chinese Chan masters certainly relished texts from India and the Buddhist kingdoms of the Silk Road like the Lankavatara and Diamond Sutras (they are really great stuff, read them if you haven’t and if you have any interest in Buddhism at all. Red Pine has done great translations).

Interestingly, Chuang-Tzu may have lived about the same time as Pyrrho. Of course they wouldn’t have met. Lao-Tzu lived earlier, it seems more about the time of Gautama Buddha (though dates are controversial for both)! One story in Daoist lore is that near the end of his life Lao-Tzu was said to have left China to travel west. Is Lao-Tzu and Gautama the same name as Beckwith suggests using a linguistic analysis?What does that imply? Very odd for someone who is Chinese to purposely go off to die far away in foreign lands. Very intriguing. Again, read Beckwith if you are interested in the argument.

Anyway, back to the core teachings, however they fit into the historical scheme of things. These core teachings are very scientific. Not only because they can be inductively arrived at by observation and confirmed by experience (the original meaning of the term “experiment”; same root word and that was on purpose), but in their essence.

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Regarding impermanence certainly no composite “thing” lasts forever.

Modern physics does not have a permanency of things as an essential, verifiable teaching. Not particles, not universes. Quite the opposite. There are neither fixed particles (atoms and subatomic particles are basically forms of energy) or a fixed time and space. I am not only talking about relativity theory, which does imply that time and space are not separate, fixed entities, but more basically. Much has been written and discussed on the physics and metaphysics (that is the interpretation of physics, not the study of ghosts and goblins) about time and space. We do not know the extent of time and space, or even if these things are really distinct entities, if the in fact exist other than as illusions of mind. Robert Lanza talks about this in his book Biocentrism, as do others, and I understand Dr. Lanza is writing another book about time, space and the ‘illusion of death.’

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Regarding the lack of innate existence we have seen particles themselves are just perturbations of energy, of the ‘quantum field.’ Modern biology and the earth sciences teaches us that evolution is contingent on the environment just as the earth and its atmosphere has been shaped by life. It is the environment that determines “fitness.” Most of the minerals on earth were made possible by the oxygen released by photosynthesis and exist nowhere else in the solar system. Neither the earth or the life on it, no individual, species, or life itself for that matter is fixed and innate, a fixed separate definable entity.

And while science is about measurement, we don’t know the extent of what can be measured. Is there an eternal set of multiverses and dimensions? Were there “big bangs going back and forward forever? Again, if time and space are illusions, what could a beginning and end possibly mean?

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As for “unstable,” that is why there is anything at all from a scientific and mathematical point of view. I’ve written before about breaking symmetry. An ideal circle encompasses all and everything perhaps, it is certainly infinitely symmetrical by definition, but to have change there can’t be perfect symmetry. I have quoted the quantum field theory text that says that we are perturbations in a field. This is related to impermanency of ‘created things’ (is the field permanent? Is it a “created thing’?) as well. If the field were stable, there would be no things, no dharmas, no pragmata. For anything to change, to come into existence and then as it must eventually not exist, if there is to be what we experience that gives rise to the thought and perception of time and space, the system by definition must be unstable. It can’t be a system with an innate unchanging stability, a concrete thingy-ness.

There is change, evolution. There is the evolution of universes, particles, atoms, minerals, solar systems, planets, sentient beings.

As for Dukkha, unease (including but not limited to ‘suffering’ as in old translations into English), that does seem to be the nature of what happens if you yearn for the safety and reassurance of permanence, which is an illusion at best.

So science is quite compatable with anatman, dukkha and anitya.

I enjoy being challenged in my view of history by Beckwith. I enjoy seeing in the practice, writings and teachings of a poet philosopher who travelled with Alexander, a bit of confirmation that these core Buddhist/proto-scientific views were very ancient and proximate and core to the ancient teachings that underpin my practice.

Not that it really matters, I guess. Reality is reality, my practice is my practice, science is science, we live and die, however you conceive of it or dress it up or whoever may have glimpsed it before. Just kind of cool.

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Free Will and the Real Web

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Your brain processes millions of bits of data each millisecond act without any conscious effort. Most brain generated activities don’t have even a whiff of free will involved.

Certainly much of what we do, even complex behaviors, is done on “automatic pilot.” An oft quoted example is when you find yourself at some location you meant to get to without being quite aware of  f the details of how you got there (a bit scary when driving was involved). Or consider  how you cobble together what seems to be a coherent scene from what are actually disparate and rapidly changing sensory inputs that your brain compares to prior experience (that is, conditioning). Continue reading

Change and Phantoms, Suffering and Dreams

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Is the river the same river one moment to the next?

Change is the basis for everything that is. In Buddhism this is referred to as “impermanence.”  In Sanskrit the word is anitya (anicca in Pali, wuchang in Chinese, mujo in Japanese).

Anything that has component parts, that came together as aggregates in time and space as a result of some set of causes or conditions, presumably following the laws of science, is impermanent.

Nothing lasts forever. It all comes apart.

Causes and conditions will change, in part due to what they caused. Once something has been caused, it has changed the universe. Feedback loops; wheels within wheels. And when the causes and conditions change, all that they caused and all that is dependent on the conditions change as well.

Impermanence is considered one of the “three marks of existence” in Buddhism, the other two being suffering (dukha) and non-self (anatman). The insight that change is fundamental and its relationship to suffering is at the heart of the story of how a sheltered prince became the Buddha.

The Buddha is not an Asian God. Buddha means one who is awake. You might say Buddha is one who does not make chimeras or pursue phantoms as a way to cope with impermanence.

Gautama of the Shakya clan lived in what is now Northern India and Nepal about 2,500 years ago. Tradition has it that when he was born it was foretold that he would be either a great king or great spiritual leader. His father, the king, had the opinion that his son becoming a great king was the preferable outcome. The prince was coddled and protected from life’s harsh realities, and that worked for a while to distract him, keeping Gautama focused on having a good time and being a prince destined to rule. This changed when Gautama was traveling with a servant, kind of slumming it in town outside the palace gates. There he saw a sick person, an old person, and a corpse. Gautama was shaken up much like Gilgamesh was at the death of his friend.

That will happen to me, he asked. Yes, his servant, also a friend, answered, it will happen to everybody. Nobody, not even a king, can stop change.

The prince then saw a yogi, a spiritual seeker, who seemed to be at peace. How is it possible that the yogi was not totally crazed by all of this?

Great yogis can achieve wisdom and not be threatened by change, his companion replied. They can transcend the limitations of life and death.

What was a prince to do? Like Gilgamesh he set off on a quest, but for a different kind of immortality. It was not a permanent body or personality he sought, but the timelessness of enlightenment.

Stealing away at night, Gautama cut his long perfumed hair and gave away his princely clothes. For six years he took up yogic practices. He was very good at it, and his teachers wanted him to become a teacher and carry on their traditions, but while he had achieved great accomplishments in meditation, he knew that he wasn’t enlightened. He had not come to terms with change, with death. He was driven to go deeper, and took up such severe yogic austerities that he almost died and had to be revived by a drink of milk given to him by a young woman. He used his new energy to meditate and became enlightened.

His fellow yogis thought he had sold out by drinking that milk, so at first they wanted no part of him. But then they saw he was transformed. They asked him to teach them about what he had found and he laid out the Four Truths.

The first truth is the truth of suffering. At best, you can find bliss and have wonderful, ecstatic experiences, achieving prolonged periods of happiness. You can live that life of Gilgamesh, enjoying the things of your world. It isn’t all that bad for most of us most of the time. But somewhere along the line, no matter how hard you try, no matter how sincere and good and kind you are, there will be suffering. It may be no more than a small disappointment, some slight frustration, existential ennui, maybe just boredom, or it could be horrible and devastating pain, but suffering is inevitable. Look at everything you want to have. You either can’t get it, or if you can, you will lose it all someday, when you die if not before. Look at everybody you love. Either you will die first or those you love will die first. Which is better?

The second truth is the cause of suffering. Mistaking what is impermanent as being permanent is one of the traditional Buddhist “inverted views” (Sanskrit viparayasa, Pali vipallasa, Chinese diandao, Japanese tendo) that leads to suffering. The Chinese word literally means upside down; it is a matter of upside down thinking.

We only see our separate lives, our limitations and the world of change, beginnings and endings, birth and death, so we live in fear. We are afraid of change; it means loss. The loss of what we love, what we possess, the loss of our bodies and identities in the long run. Our lives, who and what we seem to be, are a lesson in impermanence. Everything changes by the second. Actually everything changes in incredibly small fractions of a second. So we attach to the bits and pieces of our lives, making up stories that help us stitch together chimeras, projections of our desire to hold on, endowing them in our minds with substance and continuity where there is really vast and uncompromising change. We suffer because we cling to the illusion that if we can stop the flow, stop evolving, just get our lives where we want them to be, we can get it right, keep things static, and live happily ever after.

That won’t happen.

The third truth is that there is a way out of suffering. And the fourth Truth is that way, the practice. It comes down to living in awareness, awake. Surf the wave of change, don’t fight it, don’t grasp at what can’t be grasped, trying to hold on to what won’t be held. Evolve. Live life based on love and compassion, not fears and desires and hidden agendas.

When I was in medical school I had some appreciation of this essential role of change in Buddhist terms, but it would also turn out to be the first means by which science entered my life in a deep way. Despite my earlier harsh judgments about science and progress, I surprised myself by enjoying my pre-med and medical school science courses. I applied myself, worked hard, and graduated at the top of my medical school class. Nonetheless, I was goal oriented, learning what I was told was required to be good doctor; I didn’t give much thought to science beyond the curriculum until I had a conversation with my cousin.

Warren is my first cousin, but he is older than I am and I didn’t really get to know him until I was in medical school. Warren is a medical doctor who didn’t practice clinical medicine after a stint in the Navy as a flight surgeon, but instead got a PhD and went into research. He was on a research team whose senior members won a Nobel Prize for their research on viruses, genes and cancer in the 1970s. His passion is teaching; Warren has taught microbiology to medical students in San Francisco and around the country for over 40 years and has been given many awards and accolades as a teacher.

Warren told me that evolution was critical to understanding anything about modern biology, and so to understanding life. Of course I understood evolution was important with implications, for example, for such practical issues like antibiotic resistance or the development of the immune system. I hadn’t thought about it as deeply as Warren was inviting me to before. Warren was very patient with me and he introduced me to a scientific view of the world.

I saw that evolution embraces a vision of change that is exquisitely fair and just. Evolution is fair because it is not something that judges at all. It is not about divine punishments for our sins or rewards for following a prescribed series of rituals, believing the right dogmas and thinking the right thoughts. Evolution is like the statue of justice with a blindfold. You can’t charm it, you can’t suck up to it, and you can’t bribe it or con it. Evolution is about what works, meaning in this context what makes more life. Change will happen, and when it does, and it works, that is what you get more of because that is what working means, surviving to have more babies. A bit of a tautology really, simple but effective.

Biologic evolution is not about creatures realizing some standard of perfection. It is not about nature striving to achieve the final perfect organism. It is a freeform dance, not a march toward some Platonic ideal, the perfect horse or the perfect beetle. It is life oozing and changing wherever it can, however it can, whenever it can.

It isn’t about us as humans, we are not the ultimate goal. Chimpanzees and bonobos are not small, powerful, dumb people. They are not losers who missed out in the race to be humans. From the biologic point of view we are being very arrogant when we think like that. Personally, in a world with no humans to destroy habitats or hunt apes down for meat, I think I’d rather be a bonobo. The females run their societies and they say hello with oral sex. That can’t be all bad.

Chimpanzees and bonobos are not our ancestors, but are our forest dwelling cousins. We all evolved from some ape that lived over 6 million years ago. A river separated chimp and bonobo ancestors almost two million years ago.  The genetics and fossils are compelling. But just look at chimps and Bonobos and you don’t even really need molecular biology or ancient stone fossilized skulls. It’s that obvious.

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This image is from Huxley’s “Evidence of Man’s Place in Nature” (1863). It has often been changed to show the evolutionary  progression from sea creatures  to land  animals, then to us walking upright, but this original is about comparative anatomy. There weren’t  many fossils or any genomes (and no real idea about genetics at all, for that matter) to go by back then, but the brilliant Darwin and Huxley grasped the relationship between us and our closest cousins, and the evolutionary implications of this relationship.

The slug on the lawn has also evolved for exactly as long as we have from the first living cell to the day we cross paths after a good rain. That slug is a distant cousin, and is clearly is a success story because there it is, slugging along living its slug life after 4 billion years of evolution. Slugs evolved into slugs long before we evolved into intellectual giants, and they may outlast us. Our big brains dedicated to the service of fear and greed may turn out to be a failed evolutionary experiment rather than the crown of creation!

There was even more to this biologic view of the world for me, above and beyond this value neutral, harsh but fair view of nature. Evolution explains so much about who and what we are in a way many of our religious traditions do not. Lets take sex as an example. Gonads and sexual desires are easy to explain from the point of view of evolution. They create diversity and keep life going. It isn’t a question of shame and blame, of a God who gives us raging hormones but judges and damns us for eternity if we use them in other than the acceptable fashion, that is, with no imagination and only to procreate. Sexuality is not intelligently designed to be a test of our will power, our ability to suppress desire, and success in life is not a matter of achieving some arbitrary state of purity. Sexuality is a question of what worked starting half a billion years ago to allow for a bit of variety in our offspring by mixing mom’s and dad’s genes and to drive us to make more of us, starting way back, before we were even fish.

It is up to us to deal with our sexuality in ways that don’t cause suffering for us as creatures that evolved for sophisticated social interactions and a need for loyalty in order to cooperate in raising our helpless slow-growing offspring. It’s a tall order in and of itself, and remains one of our greatest challenges, but it isn’t about being judged by some external standard of good and bad.

There was also the sublime vision of all life as one life in the scientific view of evolution. As Darwin wrote at the end of “The Origin of Species”:

“…there is a grandeur in this view of life, with its several powers, having been originally breathed into a few forms or onto one; and that, whilst this planet has gone on cycling on according to the fixed law of gravity, from so simple a beginning endless forms most beautiful and most wonderful have been, and are being, evolved.”

To say “we are all one” may be new-age spiritual, but it is also an unadulterated scientific fact. There are the vast and elegant webs within webs that we are embedded in, that we all share. The laws of physics, the state of the universe, the solar system, the earth and all life together create what we are as living breathing, eating and secreting, reproducing organisms. There is the complex ecology of the earth we depend on and the ecology inside our bodies; we have 10 times more bacterial cells than human cells in our bodies, and they are necessary for us to survive. We can’t live outside of these external and internal ecologies, these wheels within wheels.

But it is even much more fundamental than that. All life on Earth is truly one living organism. Every cell is the same cell. Savor that. Every cell that ever was or is now, is the same cell morphing over time. No creature, large or small, makes a single cell from scratch. Every cell came from another cell.

We are each of us derived from a single cell: our mother’s ovum. The ovum is a big juicy cell that is released from the ovary in the middle of the woman’s monthly cycle between menses, whose job is to be fertilized by sperm. When the ovum is fertilized it triggers a cascade of events. The ovum changes and, then starts dividing, and chemical signals released from the altered ovum and then from the daughter cells initiates the development of differences between those cells. If it didn’t we’d just be a ball of cells, and not a very big ball or one that would last very long. This ball of cells grabs onto the inner uterine wall, sucking life from the mother’s tissues. This starts a cascade of signals and cellular interactions that leads to other cascades, an exquisitely timed series that keeps going throughout life. We ARE our mother’s ovum writ large. This is not a metaphor. Sure dad sprinkled a bit of genetic diversity into the cell, but that wasn’t really necessary. We need that first cell; we can’t make ourselves without a starter, like sourdough bread. In fact, there are some animals that can easily do without dad. Mom’s ova just start dividing and presto: babies happen. Look it up if you want to impress your friends, it’s called parthenogenesis.

Just as every one of our cells came from our mother’s ovum, with its cell membranes and other cell parts making up our first cell, that ovum came from her mother’s ovum and cell membranes and other cell parts, on back, mother to mother, to before there were ova, to way before we slithered out of the sea. And even further back, to before there were mothers and daughters, to our single cell ancestors and then back again to the first cell or group of proto-cells, whatever we were in deep, deep times past. We’re talking 4 billion years past.  All creatures alive today are at the base of an inverted mountain whose peak is that first replicating, living cell, in total continuity, with no break in the lineage. It is the same cell membrane for four billion years, just expanded and replenished with new atoms. It is the same DNA, also constantly replenished, but with just a bit of variation here and there, a little wiggle in the genes. When the wiggle works to make the organism better able to survive and multiply, then it persists. This is evolution.

You are at the same time the tip of a mountain of all living things. All life throughout history led to you. You have two parents, four grandparents, eight great-grandparents, sixteen great great-grandparents, on and on, a geometric progression going back through time to before there were parents and grandparents. Doing the math (trust me, or do it yourself: 2 to the power of how many generations you want to look back times the average time per generation) it doesn’t take long before you have more ancestors than people who ever lived. About a thousand years should do it. Of course, that is a bit misleading, as it assumes no duplications, cousins marrying cousins, or dead ends, so you may have to go back over a hundred thousand years to find a common ancestor if you are looking at a specific gene. But for the most part, you don’t have to go back very far at all. Each one of us is the great, great … great, great-grandchild of slaves and sovereigns, saints and sinners, sages and simpletons.

Even if you have to go back as far as one or two hundred thousand years to find a human ancestor that you share with every person alive today, that is not all that long ago in the history of life or by geologic standards of time.

In fact, geologic time is the time frame of life. Life is geological. Not only because the drifting and shape-shifting continents crash into each other or tear each other apart and meteors colliding with earth change the environment, sometimes gradually and sometimes catastrophically fast, setting the scene for mass extinctions and subsequent spurts of evolution.

And not only because the elements and the flows of fluids and gases we rely on to make and maintain our bodies are all part of the geologic system, earth and atmosphere as Gaia, herself a living breathing, weeping, flowing, secreting, belching, entity. It is because we, and all living things, ARE the earth, little moving clumps of earth stuff, mini-mountains that wiggle and squirm and slither.  Spontaneous generation. Life came from non-life in the view of evolutionary science, chemistry and physics. There is no other valid materialistic scientific viewpoint.

Where can we draw an unimpeachable dividing line between life and non-life, between us and geology, geology and the universe?

We can define life as some subset of things in the universe.  We are fond of dividing, classifying and reifying, so that whatever we are thinking about is easier to grasp and fit into our limited notions of how it should and could be. Scientists who search for life on other planets have to have something to work with, so they think and write about how to define life. We can decide life is, say, those things that replicate. Are computer programs alive? What about a code that replicates itself, a computer virus or artificial computer life? Perhaps in a sense they are alive. What about defining life as things that have carbon based DNA? That leaves out the computer program, but why should we set that limit? Maybe there are such life forms on other planets or their moons that use different molecules to encode the information life needs to function.

What if we invent robots that are carbon based, can make more of themselves, and even use DNA for information storage? In these days of nanotechnology and 3-D printers and the first glimmering of quantum computation, it isn’t totally out of the question that we could achieve this in the near future.

In fact scientists do have a hard time defining life, and there is no universally accepted definition. A recent book, “What is Life,” references 40 different definitions.  The author’s starting point is the observation that life emerges from non-life. That seems obvious, but it is a critical premise. How are we, how can we be, in any way separate, outside, different, from the universe itself?

Some religious idealists don’t like the idea of spontaneous generation because it seems to fly in the face of a unique creation of life by a God outside of creation. Spontaneous generation, as conceived of before Pasteur, proved it wrong, was exemplified by the “spontaneous” appearance of maggots on rotting meat. The maggots were really hatched from flies’ eggs that were too small to be seen on the meat. That wasn’t considered proven until Pasteur in the late 19th century performed an experiment in which glass flasks with long elegantly curved necks were filled with a nutrient broth and found to remain sterile even when the end of the elegantly curved flasks’ necks were open to the air. You can still see the flasks in Paris at the Pasteur Institute. We might think Pasteur was challenging the delusions of foolish superstitious people who believed in the supernatural emergence of flies on meat, but that wasn’t what he was up to at all. Some biologists at the time thought that may be how life and evolution works, with new primitive forms being generated again and again as earlier ones evolved and became more complex. Pasteur was a devout Catholic and was not fond of the idea of spontaneous generation that was taken to imply that God didn’t have an original active role in a one time only, biblically mandated unique creation.

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“Emu Story in the Milky Way” by Gavan Urandali Flick of Kamilaroi (Australia) in which Emu becomes the Pleiades (the seven sisters) and Bundar the kangaroo sings to the wind to create changes to the waters and the dingo becomes the star Orion, howling to create storms .

Yet certainly every scientist believes ultimately in spontaneous generation, that life, the first cells, came from atoms of metals, minerals and water found in the clay of the early earth, in its oceans and in the gases of its atmosphere.

What else could we be but the product of those earth atoms, smaller atoms that were formed when the universe cooled enough for subatomic particles to congeal into atoms almost 14 billion years ago, and larger atoms forged later in supernovae, the massive explosions of large dying stars?

So while biologic time is geologic time, it is also cosmic time. And before 14 billion years ago, these subatomic particles came from the energy resulting from the birth of our universe that came from the infinite energy that …

And so where are we? What is this really all about? What is more fundamental even than energy?

I suggest we have come to the dreams stuff is made of, the source of phantoms, the fire that gives life to the equations, to what is not limited by “is” and “is not,” or to “changing” and “permanent.”  We come to Mind.

Photos courtesy of Susan Levinson

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Darwin, Huxley, Ethics, Atheism, Buddhism and the Dreams Stuff Is Made Of

                                     

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Charles Darwin’s Office

After I graduated from medical school Charles Darwin and Thomas Huxley became my intellectual heroes and my mentors. I admired both of them in part for their scientific achievements, but even more for their honesty and integrity.

Charles Darwin was not a revolutionary or a proto-hippie. Quite the opposite, he was an English countryside gentleman, a member of the bourgeoisie. But Darwin was an intelligent and sensitive man, one who cared deeply about justice. That was part of his family heritage. Both the Darwin side of the family and Charles’s maternal grandparents, the wealthy Wedgwoods of ceramic fame, were staunchly anti-slavery at a time when some of our country’s founding fathers owned slaves and some self-righteous clergy were justifying slavery using the Bible. Charles Darwin carried on his family tradition, writing eloquently about the suffering of slaves. Charles Darwin wrote in a letter in 1833:

“Hurrah for the honest Whigs! I trust they will soon attack that monstrous stain on our boasted liberty, Colonial Slavery. I have seen enough of slavery and the dispositions of the negroes, to be thoroughly disgusted with the lies and nonsense one hears on the subject…. Thank God, the cold hearted Tories”  “who.. have no enthusiasm, except against enthusiasm.” Continue reading