Viral Brains

In my last post Charles Darwin and I put us on a footing with worms as sentient beings with intelligence. And I encouraged feelings of deep love for mud. But lets note our very very intimate relationship with and debt to entities that are not even quite living by any definition: viruses.  Part of our genome, our collection of genes, including DNA that doesn’t code for proteins and used to be considered “junk” but is now known to include critically important stretches of DNA that determine which genes will be expressed (that regulate the genes), is actually derived from viruses. Such viruses result in DNA that has been incorporated into our genome, and it turns out that we may in part owe our mammalian intelligence to these viruses!

And going the other way to now extinct cousins, if your ancestors left Africa before some 50,000 to 75,000 years ago then  1-2% of your genes are variations from your ancestors having sex with Neanderthals and 30-80% of the Neanderthal genome are variants can be found to be in the modern human genome, shared by those of us early out of Africa types.

Why do I bring this up? To remind us that what we are is the same thing as viruses and Neanderthals. Or if you are a later out-of-African, not Neanderthal, but still viruses!

And sure, we share genes with bacteria, and plants. And we are made of elements brewed in stars actually, we are like complex planets. But that sounds more acceptable somehow, I think, for most of us. Sure we are star stuff, sounds awesome, but viruses, and Neanderthals?

When the old masters said “Buddha is shit” or Buddha is a worm” or “Buddha is a virus or Neanderthal” or “we are mud” (ok, they probably didn’t say that) they weren’t speaking in riddles, metaphors or trying to shock. They were simply being accurate.

Year of Mud and Worm Intelligence

There is a wonderful editorial in the scientific journal Nature this week entitled “Down to earth” (Nature News and Comment, Nature volume 517 issue 7535, Jan 20, 2015) about dirt, about mud about soil. The Food and Agriculture Organization of the United Nations (FAO) has declared this the International Year of Soils.

Soil, dirt, IS life, at least here on earth.

What is the difference between dirt and soil as positive or negative words? Just where it is relative to where we WANT it to be. When a baby “soils” her diapers, it is because we don’t LIKE to deal with shit that we use the word soil. We wish it would just be somewhere else. When we track dirt into the house, it is dirt, not soil, because we wont use it to grow stuff. Well, those of us who lived for a time with dirt floors know that is kind of arbitrary. It is about aversion and attraction based on… what to you think?

But soil, dirt is life, as basic to our embodied existence here on this planet as the sun and water. And bees. And the only thing of that bunch we are not messing up is the sun; that we are merely wasting but not using more solar energy.

Which brings me to Charles Darwin and worms. One of the first scientists to really appreciate the role of living organisms in shaping the earth, and not just the other way around, his last book written in 1882 was “Vegetable Mould and Earthworms.” Yes, he not only was at the forefront as I have detailed before in animal minds and emotions, but he was also a visionary in ecology and the very thin (one might say essentially non-existent) veil between our earth and life.

Vegetable mould is the part of the soil that is composed of organic matter derived from, or processed by, living organisms. And worms play a central role. As I mentioned in a previous post, one of the world’s longest experiments is the settling of a round stone in Charles Darwin’s backyard as earthworms eat the soil form under it and shit it out elsewhere. He even documented this process at Stonehenge!

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Darwin’s worm experiment

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Effect of earthworms on stones at Stonehenge from the book Vegetable Mould and Earthworms (1888 edition)

But while recognizing the ecologic value of worms and dirt is all well and good, here’s a challenge I suspect most of you will be able to rise to: do you think Charles Darwin thought earthworms are intelligent? Or do you put him in a box of “scientist” who can’t possibly see that they could be sentient beings, who sees all life forms as mechanical automatons.

Well, you know from how I asked it (you did go to school, right?) what the answer is. I quote:

“Judging by their eagerness for certain kinds of food, they must enjoy the pleasure of eating. Their sexual passion is strong enough to overcome for a tie their dread of light. They perhaps have a trace of social feeling, for they are not disturbed by crawling over each other’s bodies, and they sometime lie in contact… they pass the winter either singly or rolled p with others into a ball at the bottom of their burrows Although worms are so remarkably deficient in the several sense-organs, this does not proceed intelligence… we have seen that when their attention is engaged they neglect impressions to which they otherwise attended and attention indicates the presence of a mind of some kind. [comment: some level of free will as Thomas Campbell might suggest?] They are also much more easily excited at certain times than others.” [p 35]

Later in the book Darwin has 32 pages in chapter 2 on “Their Intelligence” where, as a good 19th century naturalist, he collected data on how worms chose what material they used to plug their burrows.

So while many scientists might indeed question whether worms are sentient, WE (you, me and Darwin) won’t, will we? Like Darwin, we recognize sentience when we see it, don’t we? And we are certainly big fans of dirt and worms. Our lives depend on it!

 

 

Belief Traps

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The Diamond Sutra professes that we mistakenly believe in ourselves as persons that are persistent and real entities. We make it up. We want to believe we are this and that and more.

The Lankavatara sutra discusses how we approach reality blinded by  our perceptions and projections, creating rabbits with horns.

A Zen Master said, name the color, classifying it and believing thereby that you know what it “is” in some concrete and enduring manner, and you blind the eye.

As the Enlightenment polymath and genius Laplace is supposed to have said on his death bed, we chase phantoms.

Beliefs.

We want to grasp intellectually, to touch, smell, taste, see, and hear it all. And when we can’t, we fill in the blanks with what we believe should be there, projecting our beliefs, like the way our brains fill in the physiologic/anatomic blind spots in our vision or the details in our peripheral vision that we don’t really see.

We are trapped by our beliefs, and they don’t have to be the clearly wrongheaded absurd beliefs those other people believe that lead to such disasters all of the time, as we can plainly see. Seemingly benign and elegant beliefs can still trap us and become a filter, a distortion, an unconscious bias that keeps us in a fog of delusion, keeping us in a stupor of ignorance.

On top of that, when we have sufficient insight to discover a belief we might be trapped by, a cobbled together way to pretend to ourselves that we know what we are talking about, to explain ourselves and to make our selves more comfortable, allowing us to at least have the illusion that we have some control over things we don’t really understand or have the big picture for, we often simply replace that exposed belief with a more subtle or palatable belief.

We use beliefs as shortcuts, to make our lives easier. That may be a necessary temporizing measure, but it doesn’t work for long. Our beliefs often confer a false security. We are like the turkey that thinks seeing the farmer means feeding time, until of course he is carrying an axe one morning in late November.

This is because beliefs, to the extent that they are beliefs, reflect our state of ignorance, which means our degree of entropy and disorganization, the energy not available for us to use consciously and conscientiously (more on entropy, ignorance and information later), and are at best simply a set of working hypotheses to guide us until we evolve and mature in our actual experience of reality.

Both Buddhism and science (though not all Buddhists or scientists, of course) stress experience (the word “experiment” was derived from the word “experience”), not authority or beliefs. But lacking the requisite experience and maturity, driven by fear and grasping for reassurance, we can’t abide empty files, incomplete knowledge or unclassified experience. They taunt us and remind us of our ignorance, our tentative situation. Of impermanence. Of our limitations in the world of the senses.

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Of course, that is in part why I have thought quantum mechanics might be worth looking at at all for a student of Zen. Whatever interpretation of what quantum mechanics is “really” about that you favor, quantum phenomenon minimally demonstrate that we have to resist trying to jam reality, even experimental reality, into the “how it really is” mentality of the beliefs we hold, the classifications we walk around with in our heads based on our day-to-day experience in the 4-d world of the senses at the level we experience energy transformations.

It won’t fit.

You can jam your experiences into your beliefs and your beliefs into reality, then close the lid, like pushing a spring loaded clown into a Jack in the Box, but eventually the music will stop and pop goes the weasel.

This includes beliefs in materialism (science), Platonism (math), philosophy, post-modernist relativity, religion, political or social ideals, or artistic/poetic ideals like beauty or romantic love, and yes, even Buddhism! To the extent that they are indeed beliefs that are treated as more than mere provisional models to orient you (or say Buddhism as template, as Nyogen likes to say), to the extent that they are concepts, files you need to fit your experiences into, rigid structures that can not expand as you grow and evolve, I suspect that they will sometime or another fail. And then they will cause pain and suffering for yourself and others. Or at least disappointment and disorientation!

I bring this up today because I came across this sentence that I wanted to share in a book called “My Big TOE” by Thomas Campbell:

“Jeez those belief traps are amazing – they can transmute simple ignorance and incompetence into blind stupidity in a flash.”

Been there, done that!

Beliefs: a very, very subtle practice.

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photos courtesy of Susan Levinson

Indra’s Web and Quantum Entanglement: What Happens Here Happens in Everywhere and Everytime

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Quantum entanglement is a phenomenon that, like the two slit and interferometer experiments we looked at previously, makes a mockery of our day-to-day experience of time and space. It brings to mind the vast and unyielding interconnectedness that is Indra’s web.

Let’s say we generate two particles at the same source at the same time from the same material and send them in separate directions. These particles are entangled. What does that mean? It means what I do to one has an immediate effect on the other. They are one system throughout time and space.

Suppose I measure some property of one of the particles of a pair of entangled particles. We can measure the polarization of a photon. Polarization is the orientation of the electromagnetic field of a photon (or en masse of a beam of light). Polarizing filters in glasses block horizontally oriented (polarized) photons that might be reflected off the road or a lake surface, for example, to diminish glare. Both photons in an entangled pair will have the same polarization when measured. Measure the orientation of the polarization of one photon of an entangled pair (say you find it is either horizontal or vertical), when you measure the other photon in the pair it will be in the same orientation.

Or we can measure the spin of an electron or similar subatomic particles. Spin is not really quite spin like say a top or dreidel, as point particles don’t have dimensions like width to be spinning. But certain particles like electrons do have a kind of axis with a direction that can be determined by their interactions with magnetic fields. This spin has momentum of spin, and this angular momentum is conserved, as momentum is energy and energy is conserved; this is an important symmetry. So if one electron of an entangled pair is spin up, the other will be spin down when measured.

Now the most important phrase is “when measured.” This is critical because one of the aspects of entanglement that makes it so mind blowing is that it simply cannot be said what the polarization of either photon or the spin of either electron in the entangled pairs is until a measurement is made. Just like we saw before: there is no what it “really” is. There is no which of the two slits the particle “really” takes or which of the paths in the arms of the interferometer the particle is “really” in. There is superposition. Similarly, there is no spin or polarization until it is measured in one of the particles of the entangled pair. It neither is or isn’t! Such a dualistic, concrete material notion of what is or isn’t doesn’t work!

That should come as a surprise. After all, if I have a pair of shoes, with one shoe here in the room with me and the other shoe in in another room, and the shoe here is a left shoe, the other is going to be a right shoe (much like spin). If one shoe is black, the other will be black, if one is white, you can bet the other is white (like polarization). No great mystery. These are the properties of the shoes! So why can’t it be the same for entangled particles? The properties are inherent, even if sometimes hidden. Surely the property is there, the is or isn’t of it exists, we just don’t know what it is.

But no, there are no hidden properties. There really is no sense in which the particle has that property until it interacts in some way that demands that property, until that is, it is measured. A physicist named Bell suggested a mathematical way to test this and the experiments were later done showing to the satisfaction of almost all physicists that there are no hidden variables in these entangled quantum particles (though, as in so many aspects at the edge of physics there are some who dispute whether the final word is in). The logic for this “Bell’s inequality” is a bit complex so rather than get distracted now I will save it for another post for those interested (a book I recommend if you are interested in that by a world class quantum experimentalist that is written for lay readers and goes into this is “Dance of the Photons” by Anton Zeilinger. Zeilinger is the one who did the experiments showing Bucky balls of 60 carbon atoms have a wave function that will show quantum interference).

One reason I don’t want to get into Bell’s logic now is that there’s more to entanglement and I don’t want to get distracted but the math.

There is nonlocality, spooky action at a distance, as Einstein put it. It doesn’t matter how far away the two entangled particles are when one is measured. Scientists are convinced you could be a million light years away from the scientist measuring the other particle, trillions and trillions of miles and the million years it would take a photon to get from one scientist to the other would collapse into no space and no time separation the instant you measured one of the particles. Information, according to the theory of relativity (say about the spin of a particle), is not supposed to travel faster than the speed of light, but the measurement of one particle of a pair of entangled particles determines the properties of both particles immediately, whether the particles are a tiny fraction of a millimeter apart or they are so far apart that it would take light a million years for information as we understand it and normally experience it to traverse the distance separating them.

Clearly it isn’t a question of sending information across time and space!

And there is more. For that, lets get back to Anton Zeilinger.

Anton Zeilinger, the experimental physicist from Austria, whose book I mentioned above, is an interesting guy. He met with the Dalai Lama and other researchers and Buddhists in one of the Dalai Lama’s science and Buddhism meetings, and his talk is reported in “The New Physics and Cosmology: Dialogues with the Dalai Lama” Edited by Arthur Zajonc, 2004 Oxford University Press.

Zeilinger starts by noting: “in classical physics and everyday life a mountain is there even when I don’t look. In quantum physics, this position no longer works.” Later the Dalai Lama asks him if “nothing can be said about the nature of light independent of the measurement whatsoever?” Zeilinger responds “that’s right.” As we have come to several times thinking about quantum experiments, it is neither there nor not there. It neither is nor isn’t, until it is or isn’t in experience.

Zeilinger goes on to discuss the double slit experiment we have gone over before. When the Dalai Lama asks if particles interact like billiard balls demanding physical contact, Zeilinger makes it very clear that “in quantum physics we have given up such pictures” and “we should not have pictures anymore” as “all pictures fail”. We are misled when we extrapolate our day-to-day experience into this realm, one of the real lessons for Zen students and the rest of us in quantum mechanics. Even science asks that you give up your prejudices, your conditioned perceptual expectations!

He says that all of this “holds not only for small things” [e.g. photons and electrons and Bucky balls] “but also for large things. It’s not a question of size; it’s a question of economy because the larger the things become, the more expensive the experiments get.” It is true that ”physicists now believe that the world is quantum mechanical through and through.”

In discussing entanglement he brings up nonlocality, which is at the heart of what we have seen so far. After all, what I do in Vegas to a photon should stay in Vegas, stay local, unless there is a local to other local to other local transmission of information. A signal propagating through space and time, a photon flying through space from a star to our eyes at the speed of light, or a signal somewhat less quickly moving through a fiber optic cable. Continuous movement, no interruption, here to there, to there, and then to there, through space and time in a predictable and well behaved manner that can be timed and followed. But as we saw, that isn’t what happens in entanglement!

As Zeilinger says “under certain circumstances two particles remain one system even if they are separated by a very large distance. They are not really separated in a deep sense… We can keep going and talk about four or five or six particles. It never ends.”

The Dalai Lama then asks: “Are you implying that the entire universe is internally entangled?”

“Anton Zeilinger: That’s a nice idea, but I would not want to take a position on that because, as an experimentalist, I would not know how to prove it.”

OK, for now we can give him that. He’s trying to be honest and stick to what he knows. It’s his job, he feels responsible to the rules of his physics discipline and to his physics brethren and he won’t speculate. We all should do that to some degree, keep to what we know, though I clearly don’t always; that would not be nearly as much fun. In any case it was pretty cool for him to put himself out there as a physicist and be open. As you can tell, I enjoyed their discussion that also goes on to randomness and causality, but enough for now.

Anton Zeilinger has done very far out entanglement delayed choice experiments. Let’s look at one. If Alice and Bob (they always show up in these things; it is really standard nomenclature in information theory and cryptography to invoke Alice and Bob) each create a pair of entangled particles and send one from each pair to Victor so he now has a pair of particles, one from Alice and one from Bob, and then Victor entangles this pair, then Alice and Bob’s remaining particles will also be found to be entangled, even though they didn’t interact directly! This is called entanglement swapping. If Victor doesn’t entangle his pair of particles, then Alice and Bob’s particles will not be entangled. So you can find out what Victor did by seeing if Alice and Bob’s particles are entangled.

Very clever!

But what if Victor makes his choice AFTER Alice and Bob make the measurements that determine whether their particles are entangled, even if only a tiny time bit after?

You guessed it; what Victor decides and what he does with his particles, even AFTER Alice and Bob measured their particles, will determine what they will have found, whether or not their particles are entangled.

Zeilinger and his colleagues published an article in Nature Physics describing such an experiment (Xiao-sung Ma et al Experimental delayed-choice entanglement swapping, published online 4/12): “This can also be viewed as ‘quantum steering into the past’.”

They end their article saying: “Bohr [a famous founder of quantum mechanics] said that no elementary phenomenon is a phenomenon until it is a registered phenomenon. We would like to extend this by saying that some registered phenomenon do not have meaning unless they are put in relationship with other registered phenomena.”

Like Anton Zeilinger suggests, maybe we should have no pictures, and indulge no speculation beyond the data.

It is enough perhaps to realize that you can’t depend on such pictures, concepts derived from your day-today life at the scale at which you experience the universe with your senses.

But Indra’s web, vast and interconnected beyond imagination, really is a great non-picture picture!

 

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All Buddhas Throughout Space and Time (and you and me and everything else)

This is how Lancaster and Blundell begin their book “Quantum Field Theory for the Gifted Amateur” ( note: by “gifted amateur” they mean someone who knows something of the math of basic quantum mechanics, relativity theory and Fourier transforms, but is not a professional physicist!):

“Every particle and every wave in the Universe is simply an excitation of a quantum field that is defined over all space and time.”

I remember the first time I heard in our service at the Zen center the part of a chant that goes: “all Buddhas throughout space and time…”

Pretty straightforward, and I suppose not exactly quantum field theory, but I was hooked.

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